| 1 | Dani PEDROSA | HONDA | 1'45.792 |
| 2 | Jorge LORENZO | YAMAHA | 1'46.057 |
| 3 | Ben SPIES | YAMAHA | 1'46.138 |
| 4 | Andrea DOVIZIOSO | YAMAHA | 1'46.220 |
| 5 | Alvaro BAUTISTA | HONDA | 1'46.354 |
| 6 | Cal CRUTCHLOW | YAMAHA | 1'46.436 |
| 7 | Casey STONER | HONDA | 1'46.480 |
| 8 | Valentino ROSSI | DUCATI | 1'46.641 |
| 9 | Stefan BRADL | HONDA | 1'47.028 |
| 10 | Nicky HAYDEN | DUCATI | 1'47.240 |
| 11 | Aleix ESPARGARO | ART | 1'47.685 |
| 12 | Hector BARBERA | DUCATI | 1'47.726 |
| 13 | Katsuyuki NAKASUGA | YAMAHA | 1'47.737 |
| 14 | Karel ABRAHAM | DUCATI | 1'47.791 |
| 15 | Randy DE PUNIET | ART | 1'48.358 |
| 16 | James ELLISON | ART | 1'48.628 |
| 17 | Danilo PETRUCCI | IODA-SUTER | 1'49.243 |
| 18 | Michele PIRRO | FTR | 1'49.349 |
| 19 | Roberto ROLFO | ART | 1'49.353 |
| 20 | Yonny HERNANDEZ | BQR | 1'49.502 |
| 21 | Colin EDWARDS | SUTER | 1'49.974 |
| 22 | Ivan SILVA | BQR | 1'50.117 |
| 1 | Pol ESPARGARO | KALEX | 1'51.192 |
| 2 | Marc MARQUEZ | SUTER | 1'51.792 |
| 3 | Bradley SMITH | TECH 3 | 1'51.983 |
| 4 | Scott REDDING | KALEX | 1'51.986 |
| 5 | Esteve RABAT | KALEX | 1'52.044 |
| 6 | Jordi TORRES | SUTER | 1'52.097 |
| 7 | Nicolas TEROL | SUTER | 1'52.179 |
| 8 | Julian SIMON | SUTER | 1'52.228 |
| 9 | Thomas LUTHI | SUTER | 1'52.284 |
| 10 | Anthony WEST | SPEED UP | 1'52.294 |
| 11 | Alex DE ANGELIS | FTR | 1'52.441 |
| 12 | Toni ELIAS | KALEX | 1'52.470 |
| 13 | Simone CORSI | FTR | 1'52.556 |
| 14 | Johann ZARCO | MOTOBI | 1'52.652 |
| 15 | Takaaki NAKAGAMI | KALEX | 1'52.720 |
| 16 | Yuki TAKAHASHI | FTR | 1'52.721 |
| 17 | Mika KALLIO | KALEX | 1'52.757 |
| 18 | Andrea IANNONE | SPEED UP | 1'52.893 |
| 19 | Axel PONS | KALEX | 1'52.895 |
| 20 | Xavier SIMEON | TECH 3 | 1'52.945 |
| 21 | Dominique AEGERTER | SUTER | 1'52.968 |
| 22 | Mike DI MEGLIO | KALEX | 1'53.010 |
| 23 | Marcel SCHROTTER | BIMOTA | 1'53.179 |
| 24 | Ricard CARDUS | AJR | 1'53.255 |
| 25 | Ratthapark WILAIROT | SUTER | 1'53.311 |
| 26 | Gino REA | SUTER | 1'53.361 |
| 27 | Tomoyoshi KOYAMA | SUTER | 1'53.410 |
| 28 | Alessandro ANDREOZZI | SPEED UP | 1'53.951 |
| 29 | Kohta NOZANE | FTR | 1'54.130 |
| 30 | Elena ROSELL | SPEED UP | 1'55.017 |
| 31 | Eric GRANADO | MOTOBI | 1'55.290 |
| 32 | Jesko RAFFIN | KALEX | 1'55.739 |
| 1 | Sandro CORTESE | KTM | 1'58.739 |
| 2 | Danny KENT | KTM | 1'58.953 |
| 3 | Zulfahmi KHAIRUDDIN | KTM | 1'59.268 |
| 4 | Alex RINS | SUTER HONDA | 1'59.337 |
| 5 | Maverick VIÑALES | FTR HONDA | 1'59.343 |
| 6 | Jonas FOLGER | KALEX KTM | 1'59.399 |
| 7 | Luis SALOM | KALEX KTM | 1'59.401 |
| 8 | Louis ROSSI | FTR HONDA | 1'59.489 |
| 9 | Efren VAZQUEZ | FTR HONDA | 1'59.856 |
| 10 | Alessandro TONUCCI | FTR HONDA | 1'59.870 |
| 11 | Niklas AJO | KTM | 1'59.930 |
| 12 | Brad BINDER | KALEX KTM | 2'00.027 |
| 13 | Romano FENATI | FTR HONDA | 2'00.057 |
| 14 | Alberto MONCAYO | FTR HONDA | 2'00.080 |
| 15 | Jakub KORNFEIL | FTR HONDA | 2'00.093 |
| 16 | Miguel OLIVEIRA | SUTER HONDA | 2'00.155 |
| 17 | Isaac VIÑALES | FTR HONDA | 2'00.254 |
| 18 | Jack MILLER | HONDA | 2'00.287 |
| 19 | Niccolò ANTONELLI | FTR HONDA | 2'00.295 |
| 20 | Alex MARQUEZ | SUTER HONDA | 2'00.337 |
| 21 | Arthur SISSIS | KTM | 2'00.405 |
| 22 | Hyuga WATANABE | HONDA | 2'00.448 |
| 23 | John McPHEE | KRP HONDA | 2'00.555 |
| 24 | Alan TECHER | TSR HONDA | 2'00.677 |
| 25 | Adrian MARTIN | FTR HONDA | 2'00.745 |
| 26 | Luca AMATO | KALEX KTM | 2'01.066 |
| 27 | Toni FINSTERBUSCH | HONDA | 2'01.079 |
| 28 | Yuudai KAMEI | HONDA | 2'01.182 |
| 29 | Kenta FUJII | TSR HONDA | 2'01.184 |
| 30 | Giulian PEDONE | SUTER HONDA | 2'01.727 |
| 31 | Danny WEBB | MAHINDRA | 2'01.868 |
| 32 | Josep RODRIGUEZ | FGR HONDA | 2'02.084 |
| 33 | Armando PONTONE | IODA | 2'03.612 |
| 34 | Riccardo MORETTI | MAHINDRA | 2'04.745 |